2012 EuPathDB Workshop
2012 Schedule
The course begins at 6:30 pm on Sunday, June 17th with a reception.(If you arrive before the 4:00 pm hotel check-in time, you can call that day to see if your room is available for earlier check in. The Hotel can not guarantee your room will be ready before 4:00 pm. The number is 1-706-549-4433. There is a free hotel shuttle that can take you downtown for sightseeing while you wait.)
The course will finish at 5pm on Wednesday, June 20th.
Participants will be provided with desktop computers to use in the workshop sessions. You are welcome to bring your own laptop to use in other areas. The Holiday Inn Hotel provides free high-speed Internet in all rooms and lobby.| Date | Time | Place | Event | Instructor |
|---|---|---|---|---|
| Sunday, June 17th | 6:30-9:00pm | Holiday Inn Georgian Ballroom |
Registration & Welcome Reception
- General introduction to EuPathDB and omics - Workshop attendees and instructors introductions - Transportation information |
Jessie Kissinger Omar Harb Susanne Warrenfeltz |
| Monday, June 18th | 7:00am | Holiday Inn Redfearn Grille |
Optional Breakfast (breakfast coupons provided in welcome packet) | |
| 8:30-8:45am | Life Sciences Room C128 |
General Workshop Introduction | Eileen Kraemer Susanne Warrenfeltz Omar Harb |
|
| 8:45-9:00am | Room C128 | Introductory Glossary Survey | ||
| 9:00-9:45am | Room C128 | Site Usability Exercise | Eileen Kraemer Susanne Warrenfeltz |
|
| 9:45-10:30am | Room C128 | Introduction to EuPathDB sites and the search strategy system | Omar Harb | |
| 10:30-10:45am | Room B116 | Morning Coffee Break (food provided) | ||
| 10:45-12:15pm | Room C128 |
Exercise I: Finding genes and exploring gene pages |
Susanne Warrenfeltz | |
| 12:15-1:15pm | Room B116 | Lunch (provided) | ||
| 1:15-2:00pm | Room C128 |
Exercise II: Using the genome browser |
Omar Harb | |
| 2:00-2:45pm | Room C128 |
Exercise III: RNA sequence data analysis (Part 1: using pathogen portal's RNAseq pipeline) |
Omar Harb Brian Brunk Jessica Kissinger |
|
| 2:45-3:00pm | Room B116 | Afternoon Snack Break (provided) | ||
| 3:00-4:00pm | Room C128 | Exercise IV: Population (SNPs) data Polymorphisms SNPs and Alleles |
Brian Brunk | |
| 4:00-5:30pm | Room C128 | Sneak preview and Beta testing new features in EuPathDB:
Galaxy User Interface Galaxy Survey Site Search Survey |
All | |
| 6:00-8:00pm | Coverdell Center Room 340 |
Dinner | ||
| Tuesday, June 19th | 7:30am | Holiday Inn Redfearn Grille |
Optional Breakfast | |
| 9:00-10:00am | Life Sciences Room C128 |
Exercise V: Protein motifs and domains Regular Expression Handout |
Omar Harb | |
| 10:00-10:30am | Room C128 |
Exercise VI: DNA motifs |
Brian Brunk Susanne Warrenfeltz |
|
| 10:30-10:45am | Room B116 | Morning Coffee Break (food provided) | ||
| 10:45-11:15am | Room C128 | Exercise VI: DNA motifs (continued) | ||
| 11:15-12:15pm | Room C128 |
Exercise VII: Isolate data |
Omar Harb | |
| 12:15-1:15pm | Room B116 | Lunch (provided) | ||
| 1:15-2:15pm | Room C128 |
Exercise VIII: Orthology and phylogenetic profiles |
Omar Harb | |
| 2:15-2:45pm | Room C128 |
Exercise IX: Data retrieval and download |
Omar Harb Susanne Warrenfeltz |
|
| 2:45-3:00pm | Room B116 | Afternoon Snack Break (provided) | ||
| 3:00-4:00pm | Room C128 |
Exercise X: RNA sequence data analysis (Part 2: viewing and analyzing your results continuation of exercise 3). |
Omar Harb | |
| 4:00-5:30pm | Room C128 |
Exercise XI: Exploring proteomics data Short presentation: Proteomics Data at EuPathDB |
Brian Brunk | |
| Wednesday, June 20th | 7:30am | Holiday Inn Redfearn Grille |
Optional Breakfast | |
| 9:00-10:30am | Life Sciences Room C128 |
Exercise XII, Part I: Exploring transcriptomic data |
Brian Brunk Omar Harb |
|
| 10:30-10:45am | Room B116 | Morning Coffee Break (food provided) | ||
| 10:45-12:15pm | Room C128 | Exercise XII, Part II: Exploring transcriptomic data | Brian Brunk Omar Harb |
|
| 12:15-1:15pm | Room B116 | Lunch (provided) | ||
| 1:15-2:45pm | Room C128 |
Exercise XIII: Complex strategy using genomic colocation |
Omar Harb | |
| 2:45-3:00pm | Room B116 | Afternoon Snack Break (provided) | ||
| 3:00-4:00pm | Room C128 |
Exercise XIV: Complex strategy (finding vaccines and drug targets) |
David Roos | |
| 4:00-4:30pm | Room C128 | Outreach | Omar Harb Susanne Warrenfeltz |
|
| 4:30-5:00pm | Room C128 |
Exit survey and general discussion |