June 17:

8AM-9AM

Welcome Ceremony will be held at the auditorium Euclides Jaramillo

9AM-11AM

Finding genes and basic search strategies

11AM-12PM

Genome Browser I: Introduction to the genome browser

12PM-1PM

Lunch

1PM-3PM

Genome Browser II: Interpreting RNAseq data

3PM-3:30PM

Coffee break

3:30PM-4:30

Orthology and Phylogenetic Profiles

4:30PM-6PM

RNA sequence data analysis via Galaxy, Part I Uploading data and starting the workflow (Group Exercise)

June 18:

8AM-9AM

Sequence Exercises: Motifs, domains and colocation

Introduction: Regular Expressions
Quick-Start: Regex Cheat Sheet
Links to Regular Expression Resources
Even more Regular Expression Help

9AM-12PM

RNA sequence data analysis Part II: viewing and analyzing your results (Group Exercise)

FastQC Result Interpretation
Beginner DESeq2 guide
FastQC output
SNP Eff manual
Trimmomatic Manual

12PM-1PM

Lunch

1PM-3PM

Functional Genomics I: Transcriptomics, Proteomics, GO Enrichment, Metabolic Pathways

3PM-3:30

Coffee break

3:30PM-4:30PM

Functional Genomics II: Host Response datasets

4:30PM-6PM

Population Genetics