EuPathDB Workshop

2016 Schedule

The course begins at 9:30 am on Monday, August 8th with a reception. The course will finish at 6:00 pm on Tuesday, August 9th.

Participants are expected to bring their own laptops to use in the workshop sessions.

Instructors: Eve Basenko, Jessie Kissinger, Susanne Warrenfeltz

Time	Event	Instructor
Monday, August 8, 2016
9:30-9:45am	General Workshop Introduction	Eve Basenko, Jessie Kissinger, Susanne Warrenfeltz
9:45-10:45	Lecture: Omics Overview	Jessie Kissinger
10:45-11:15am	Turbo Talks from Students	Everyone
11:15-11:30am	Morning Coffee Break
11:30-12:00am	Introduction to EuPathDB sites and the search strategy system	Susanne Warrenfeltz
12:00-1:00pm	Lunch (provided)
1:00-3:00pm	Finding genes, examining gene pages and building search strategies	Eve Basenko, Susanne Warrenfeltz
3:00-3:15pm	Afternoon Coffee Break
3:15-4:30	Browser I: The Genome Browser: alignments and comparative genomics	Jessie Kissinger
4:30-5:30pm	Browser Exercise II: Interpreting RNAseq data Advanced Browser II- on your own time High resolution gbrowse image	Susanne Warrenfeltz
5:30-6:00pm	Enrichments and Transformations: Tools for investigating your search results.	Eve Basenko
Tuesday, August 9, 2016
8:30-9:15am	Isolates	Jessica Kissinger
9:15-11:00am	Functional Genomics 1: Transcriptomics and Proteomics	Jessica Kissinger, Eve Basenko
10:15-10:30am	coffee available
11:00am-12:00pm	Functional Genomics 2: Host Response	Susanne Warrenfeltz, Eve Basenko
12:00-1:00	Lunch (provided)
1:00-1:45pm	Funcional Genomics 2: Host Response continued	Susanne Warrenfeltz, Eve Basenko
1:45-3:00pm	Sequence Exercises: Motifs, Domains and Colocation Quick-Start: Regex Cheat Sheet Links to Regular Expression Resources Even more Regular Expression Help	Susanne Warrenfeltz, Eve Basenko
3:00-3:15pm	Afternoon Coffee Break
3:15-4:30pm	Population Genetics: SNPs	SNPs powerpoint	Susanne Warrenfeltz, Eve Basenko
4:30-5:15	Orthology and phylogenetic profiles	Susanne Warrenfeltz
5:15-5:30pm	Workshop Survey	Susanne Warrenfeltz, Eve Basenko