Genomics Workshop Schedule and Exercises
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Thursday |
Friday |
Saturday |
Sunday |
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2/20/14 |
2/21/14 |
2/22/14 |
2/23/14 |
| 9 am |
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Gene
Page Exercises |
Mapping Exercises
- II |
Q
& A session |
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 GeneID,
BLAST, Text searches |
Interpretating
mapping results |
Harb,
Roos et al |
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Harb,
Roos et al |
Harb, Roos et al |
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Lecture |
| 10 am |
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Bonus
Exercise |
Pattern
rec'n, Regular exp'ns |
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Harb |
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Tea/Coffee |
Tea/Coffee |
Tea/Coffee |
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| 11 am |
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Lecture |
Lecture |
Sequence
Exercises |
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Gene
Annotation |
Population
genetics datasets |
Motif
Searches
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Roos |
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Harb,
Roos et al |
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RedEX
Help
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| 12 noon |
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Browser Exercises |
Genetics
Exercises |
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Alignments,
Comparative Gx |
SNPs,
Population genetics |
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Harb, Roos et al |
Harb, Roos et al |
Lecture |
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Designing
(pathogen) Genome |
| 1 pm |
Workshop Registration |
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Databases
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Roos |
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Lunch |
Lunch |
Lunch |
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| 2 pm |
Workshop
Welcome, Overview |
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Preiser,
Bozdech, Roos, Harb, He |
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Lecture |
Lecture |
Data
Integration Exercises - I |
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Gx
Technologies & Applications |
Phylogeny
reconstruction |
Complex
queries |
| 3 pm |
Participant
presentations |
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Roos |
Harb,
Roos et al |
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Who
are you, and what |
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are
your interests? |
Query
Exercises |
Orthology
Exercises |
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3
min each |
Functional
Genomics Datasets |
Phyletic
pattern queries |
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| 4 pm |
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Harb,
Roos et al |
Harb, Roos et al |
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| 5 pm |
Lecture |
Tea/Coffee |
Tea/Coffee |
Tea/Coffee |
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Intro
to Genome Informatics |
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Omar
Harb |
Mapping
Exercises - I |
Pathway Exercises |
Data
Integration Exercises - II |
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Mapping
RNAseq data |
Metabolism
& Pathways |
Complex
queries |
| 6 pm |
Welcome reception |
Harb,
Roos et al |
Harb, Roos et al |
Harb,
Roos et al |
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NGS
mini-lecture |
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Dinner
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Research
Lecture |
Research
Lecture
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Closing
Dinner |
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| 7 pm |
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Genomic
applications in
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Plasmodium
evolution |
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clinical
and population biology |
and
population genetics |
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Research
Lecture
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Peter
Preiser
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Zbynek
Bozdech |
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Dinner |
Dinner |
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| 8 pm |
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Biology &
genomics of |
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host-pathogen
interactions |
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David Roos |
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