|
|
|
|
Sunday -
May 13, 2018
|
|
13:00 -
14:00
|
Registration and Lunch
|
|
|
14:00
- 15:30
|
Instructor Introductions and Participant Presentations
|
|
|
16:00 -
16:30
|
Break
|
|
|
16:30
- 18:30
|
Introduction to Fungal Informatics Databases
|
|
|
18:30 -
20:00
|
Welcome Drinks and Dinner
|
|
|
20:00
- 21:00
|
Seminar
|
Dr. Regina Kanmann
|
|
Monday -
May 14, 2018
|
|
7:30 -
9:00
|
Breakfast
|
|
|
9:00
- 10:30
|
Database Resources: EnsemblFungi/PhytoPath
|
Erin Haskell, Emily Perry
|
|
10:30 -
11:00
|
Break
|
|
|
11:00
- 13:00
|
Hands on Exercises: Gene Pages and Genome Browsers
|
All Instructors
|
|
13:00 -
14:00
|
Lunch
|
|
|
14:00
- 16:00
|
Database resources: FungiDB
|
Evelina Basenko, Jane Pulman, Omar Harb
|
|
16:00 -
16:30
|
Break
|
|
|
16:30
- 18:00
|
Hands on Exercises: Database queries and EuPathDB Galaxy: RNA-Seq
|
Evelina Basenko, Jane Pulman, Omar Harb
|
|
19:00 -
20:00
|
Dinner
|
|
|
20:00
- 21:30
|
Seminar
|
Dr. Tammi Vesth
|
|
Tuesday -
May 15, 2018
|
|
7:30 -
9:00
|
Breakfast
|
|
|
9:00
- 10:30
|
Database Resources: JGI/Mycocosm
|
Alan Kuo
|
|
10:30 -
11:00
|
Break
|
|
|
11:00
- 13:00
|
Hands on Exercises: Genome Annotation; WebApollo, MycoCosm
|
All Instructors
|
|
13:00 -
14:00
|
Lunch
|
|
|
14:00
- 16:00
|
Hands-on Exercises: Transcriptomics
|
Evelina Basenko, Omar Harb, Jane Pulman
|
|
16:00 -
16:30
|
Break
|
|
|
16:30
- 18:00
|
EuPathDB Galaxy: RNA-Seq Analysis and Variant Calling Part I
|
Omar Harb, Jane Pulman, Evelina Basenko
|
|
19:00 -
20:00
|
Dinner
|
|
|
20:00
- 21:00
|
Seminar
|
Dr. Elaine Bignell
|
|
Wednesday, 16
May 2018
|
|
7:30 -
9:00 am
|
Breakfast
|
|
|
9:00
- 10:30
|
Database Resources: SGD/CGD
|
Kevin MacPherson
|
|
10:30 -
11:00
|
Break
|
|
|
11:00
- 13:00
|
Hands on Exercises: Comparative Genomics, Compara, GBrowse, MycoCosm
|
All Instructors
|
|
13:00 -
14:00
|
Lunch
|
|
|
14:00
- 16:00
|
Hands-on Exercises: Functional Analysis: ontologies; enrichment
|
David Roos, Evelina Basenko, Jane Pulman, Omar Harb
|
|
16:00 -
16:30
|
Break
|
|
|
16:30
- 18:00
|
Hands-on Exercises: Genome Analysis, EuPathDB Galaxy: Variant calling Part II
|
Jane Pulman
|
|
19:00 -
20:00
|
Dinner
|
|
|
20:00
- 21:30
|
Seminar
|
Dr. David Roos
|
|
Thursday, 17
May 2018
|
|
7:30 -
9:00
|
Breakfast
|
|
|
9:00
- 10:30
|
Database Resources: PomBase
|
Antonia Lock
|
|
10:30 -
11:00
|
Break
|
|
|
11:00
- 13:00
|
Hands on Exercises: Functional Analysis, pathways, proteomics, metabolomics
|
All Instructors
|
|
13:00 -
14:00
|
Lunch
|
|
|
14:00
- 16:00
|
Hands-on Exercises: Pattern Recognition, InterPro, Motifs, Regular expressions
|
Evelina Basenko, Jane Pulman, Omar Harb
|
|
16:00 -
16:30
|
Break
|
|
|
16:30
- 18:00
|
Hands-on Exercises: Evolutionaly Analysis, Synteny, Orthology, Cross-species inference
|
Jane Pulman
|
|
18:00
- 19:00
|
Introductions to Group Projects
|
Instructors and Students
|
|
19:00 -
20:00
|
Dinner
|
|
|
20:00
- 21:30
|
Group projects, continued
|
Instructors and Students
|
|
Friday, 18
May 2018
|
|
7:30 -
9:00
|
Breakfast
|
|
|
9:00
- 10:30
|
Group Projects
|
Students
|
|
10:30 -
11:00
|
Break
|
|
|
11:00
- 13:00
|
Group projects, wrap up and presentations
|
Students
|
|
13:00 -
14:00
|
Lunch and Adjourn
|
|
| Download
all course materials by clicking here |
Note: The workshop materials are free to use by anyone, under the Creative Commons BY licence
http://creativecommons.org/licenses/by/4.0/. If you wish to re-use these materials, please credit corresponding databases for their creation.
If you use any databases for your work, please cite individual databases or corresponding publications.
|
|